Data sets and R script for "Non-tuberculosis mycobacteria remodel infectious communities in cystic fibrosis associated respiratory infections."

READ METhe R Script "MHH_NTM_analysis_PR_Shared.R" will run through the analysis, but requires a wd setting that contains the dataset "Everything_table_vs1.csv" which contains both the meta data and associated microbiome data. These are split in the script.