HiC matrices from Sungalee et al. for lymphoma cell lines
收藏资源简介：
<strong>Hi-C datasets</strong> generated in Sungalee et al. are provided as intra-chromosomal contact lists and matrices, divided by cell line/condition and chromosome. The following lymphoma cell lines/conditions are available:<br> - WSU-DLCL2 (WSU_A485 treatment) - Karpas-422 (Karpas422_A485 treatment) Contact lists are provided as compressed plain-text files in which each row represents a Hi-C contact. Column fields are described below:<br> 1) strand of read 1 (0=forward, 16=reverse)<br> 2) chromosome of read 1<br> 3) position on the chromosome where read 1 aligned<br> 4) strand of read 2 (0=forward, 16=reverse)<br> 5) chromosome of read 2<br> 6) position on the chromosome where read 2 aligned<br> 7) mapping quality of read 1<br> 8) name of the read pair as seen in the FASTQ files<br> 9) mapping quality of read 2
