Statistical and power calculations animal trial persistant antimicrobials and resistance levels

This repository is containing the datasets with statistical analysis of the paper: "Extended period of selection pressure due to persistancy of antimicrobials in broilers." Power calculation Two CSV-files: Power calculation resistant isolates and Power calculation antibiotics One R-file: Power calculation antimicrobial persistent residues The phenotypic resistance R-file: Phenotypic resistance analysis trial, CSV-file: E. coli resistance per treatment The resistome analysis one CSV-files: Resistome workfile one R-file: Resistome statistical analysis Microbiome analysis Phyloseq object R-file: Rarfied phyloseq object from biom file, CSV-file: metedata, biom-file: reads_trail Alpha- and beta-diversity analysis R-file: Beta en alpha diversity animal trail, Rdata-file: rarefy.animaltrial Microbial abundance analysis R-file: relative abundance animal trial, Rdata-file: rarefy.animaltrial