Data and analysis scripts, zip archive

The zip archive includes the original data collected for this paper, as well as supporting analysis files. Each script used in the analysis is included here. Scripts include line commenting. Software packages are listed in the README, but must be downloaded separately to run. The zip archive also includes a README file, specifying input and output and purpose of each script. Scripts also available via https://github.com/amob/GenoPheno, although github scripts could possibly become altered from the manuscript versions in the future. Please see Figshare for sequences generated as part of this work https://doi.org/10.6084/m9.figshare.4714030.v1. Please see cited sources in manuscript for publicly available data that are required to repeat analysis, sources are listed in the README.