Additional file 7: of Transcriptome, proteome and draft genome of Euglena gracilis

Table S5. Surface/endomembrane proteome predictions. Panel A: Predicted numbers of ORFs encoded in the E. gracilis predicted proteome that contain a signal sequence (SS) together with additional determinants for stable membrane attachment (i.e. a glycosylphosphatidylinositol anchor (GPI) or trans-membrane domain (TMD)). Panel B: Frequency distribution of predicted Euglena-specific surface gene families, shown as number of families according to size. 608 (87.5%). Euglena-specific surface genes are predicted to be single-copy, whereas five families are predicted to have more than seven members. Panel C: PHYRE 2.0 summary results for an element of each multi-copy family (n > 4) of E. gracilis, including family size, residues matching the model and correspondent coverage of the sequence, percentage identity, confidence of prediction, and description of top template model. (XLXS 44 kb)