Gene Expression Qtl Lead Variants In Macrophages Stimulated With Ifng And Salmonella

Lead eQTL variants from RASQUAL and FastQTL analyses. Columns in the RASQUAL results: snp_id - id of the lead eQTL variant gene_id - id of the gene chisq - Chi-square statistics from RASQUAL p_nominal - Nominal p-value from RASQUAL p_eigen - Nominal p-value corrected by EigenMT for the number of indepedent tests in the cis region of the gene. n_tests - Number of independent tests estimated by EigenMT fdr_thresh - Empirical FDR 10% threshold. Those eQTLs for which p_eigen < fdr_threshold are significant at the 10% FDR level.