Additional file 8 of Identification and ranking of recurrent neo-epitopes in cancer

Additional file 8 Confirmation Status with Gold Standard Data Set. The protein changes described in van Buuren et al. ([38]) and Fritsch et al. ([37]) have been mapped to the ENSEMBL protein set and neo-epitopes have been computed using our standard pipeline. 26 of these epitopes are exactly recovered by the pipeline, for one of them the pipeline predicts a strong binder for a shorter peptide, and 5 of them are predicted to be weakly binding. Column 7 to 10 are copied from ([37]) and ([38]).