Microglia from patients with multiple sclerosis display cell-autonomous immune activation state

This repository contains the data and the code used in tanja hyvarinen's project ([e-mail])

"analysis" contains the processing and analysis of the bulk RNA sequencing data, contains the analysis of the integration between our RNA seq and external datasets."fastq" contains the raw fastq sequences of the bulk RNA sequencing"counts" contains the results of processing the fasta sequences with nfcore rnaseq workflow 

Analysis and integration folders can contain the starting raw data in "data", the R scripts in order of execution (op1, op2 ..) and the "output" folder that contains the final processed data of each operation.