Samples for CNIC-Proteomics Nextflow pipelines: nf-SearchEngine
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https://zenodo.org/record/15065924
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资源简介：
We present several input sample files for the execution of various Nextflow pipelines developed by the Cardiovascular Proteomics Lab/Proteomics Unit at the National Centre for Cardiovascular Research (CNIC, https://www.cnic.es).
The nf-SearchEngine executes the MSFragger search engine for peptide identification (https://github.com/CNIC-Proteomics/nf-SearchEngine).
The available sample files are as follows:
nf-SearchEngine_Heteroplasmic_Heart.zip: Heart tissues. Input files for nf-SearchEngine, derived from the study by Bagwan N, Bonzon-Kulichenko E, Calvo E, et al. (*), including Thermo raw files and other data.
nf-SearchEngine_Heteroplasmic_Liver.zip: Livertissues. Input files for nf-SearchEngine, derived from the same study (*), including Thermo raw files and other data.
nf-SearchEngine_Heteroplasmic_Muscle.zip: Muscle tissues. Input files for nf-SearchEngine, derived from the same study (*), including Thermo raw files and other data.
(*) Bagwan N, Bonzon-Kulichenko E, Calvo E, et al. Comprehensive Quantification of the Modified Proteome Reveals Oxidative Heart Damage in Mitochondrial Heteroplasmy. Cell Reports. 2018;23(12):3685-3697.e4. doi:10.1016/j.celrep.2018.05.080
创建时间：
2025-03-21
