Additional file 7 of Convergent network effects along the axis of gene expression during prostate cancer progression

Additional file 7: Table S6. Integration analysis of 66 tumor samples. (a) Information (i.e. reference linking them to PCa, consistency between observed and reported effect and number of tumor samples with CNAs) for the first 10 highest-scoring proteins (those with largest average absolute FCs across all tumor specimens). (b) Consistently up-regulated genes in the high-grade tumors: for each of these genes, there is a significant up-regulation of its FCs after network smoothing in the group G4/5 compared to the group G1 in all three layers (CNA, mRNA and protein). (c) Consistently down-regulated genes in the high-grade tumors: for each of these genes, there is a significant down-regulation of its FCs after network smoothing in the group G4/5 compared to the group G1 in all three layers (CNA, mRNA and protein). (d) Chromosome information for the gene members of Network Component 1. (e) Mapping from gene symbols to STRING identifiers.