Additional file 16 of Transcriptional and epigenetic changes during tomato yellow leaf curl virus infection in tomato
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Additional file 16. Datasets. Dataset S1. Total reads from RNAseq, sRNAseq and WGBS-seq. Dataset S2. Gene Set Enrichment Analysis (GSEA) of the differentially expressed genes. Dataset S3. Clustering of the differentially expressed genes. Dataset S4. sRNA-seq statistics. Dataset S5. Differentially expressed tomato siRNA loci (21-, 22- and 24-nt) overlapped with genes at 7 dpi. Dataset S6. Differentially expressed tomato siRNA loci (21-, 22- and 24-nt) overlapped with genes at 14 dpi. Dataset S7. Differentially expressed tomato siRNA loci (21-, 22- and 24-nt) overlapped with genes at 21 dpi. Dataset S8. Differentially expressed tomato siRNA loci (21-, 22- and 24-nt) overlapped with TEs/repeats at 7 dpi. Dataset S9. Differentially expressed tomato siRNA loci (21-, 22- and 24-nt) overlapped with TEs/repeats at 14 dpi. Dataset S10. Differentially expressed tomato siRNA loci (21-, 22- and 24-nt) overlapped with TEs/repeats at 21 dpi. Dataset S11. miRNAs expressed in tomato during TYLCV infection. Dataset S12. Degradome-seq analysis in tomato during TYLCV infection. Dataset S13. Predicted target genes for the sRNAs. Dataset S14. Differentially expressed phasiRNAs in tomato during TYLCV infection. Dataset S15. WGBS statistics.
提供机构：
Bejarano, Eduardo R.; Križnik, Maja; Petek, Marko; Romero-Rodríguez, Beatriz; Jiao, Chen; Zagorščak, Maja; Castillo, Araceli G.; Fei, Zhangjun; Gruden, Kristina
创建时间：
2024-09-11
