Summary of the sequencing parameters [mean, median and standard deviation of the average sequencing depth, percentage of coverage, percentage of GC content, and number of coding sequences (CDS)] of the two MiniSeq runs: historical isolates and recent isolates sequenced at ITM and NRL, respectively.

Average sequencing depth is the number of sequenced bases divided by the genome size; coverage (%) is the percentage of the genome that is covered by at least one (well-mapped) read; GC (%) is the percentage of G and C nucleotides, CDS is the number of genes (coding sequences), and SD is the standard deviation.