ProjecTILs human reference atlas of tumor-infiltrating and blood Dendritic Cells (DC), version 2

ProjecTILs human reference atlas of blood and tumor-infiltrating Dendritic Cells (DC), generated by semi-supervised STACAS integration of 11 scRNA-seq datasets spanning 5 cancer types. The datasets were obtained from Gerhard et al. JEM, 2020, as well as Villani et al. Science, 2017, for the blood samples.The dataset is available as a Seurat object, with subtype labels (functional.cluster), sample of origin and several other measurement for each cell stored in the object metadata. The object can be directly used as a reference atlas for ProjecTILs (Andreatta et al. Nat Comms 2021) or HiTME tools.<b>v2 updates:</b><b>Downsampling of cDC2_CLEC10A subset</b><b>Splitting MonoDC subset into: MonoDC_CD14, MonoDC_CD16, and MonoDC_DN</b>Code for its generation can be found at: https://github.com/carmonalab/DC_atlasv1 found at https://doi.org/10.6084/m9.figshare.22041191