Data from Matrishin et al. "Phages are important unrecognized players in the ecology of the oral pathogen Porphyromonas gingivalis"

Data files associated with Matrishin et al. "Phages are important unrecognized players in the ecology of the oral pathogen <em>Porphyromonas gingivalis</em>". Note: Placeholder GCA identifiers are used for analyses of 5 newly sequenced<em> Pg</em> genomes in the initial version of the associated biorxiv manuscript and supplementary files, as well as those deposited here to zenodo as v2022.364. Placeholder identifiers will be updated to official NCBI accession GCA identifiers once these are received. Directory Contents <strong>01.bax.bakta</strong> Results of Bakta annotation of 88 <em>Pg</em> genomes. <strong>02.bax.ppanggolin</strong> Results of PPanGGOLiN pangenome analysis of 88 <em>Pg</em> genomes. <strong>03.bax.combo</strong> Results of multiple analyses used to inform identification and curation of prophages in <em>Pg</em> genomes, provided as bacterial genome fastas and gff files that can be uploaded together to genome viewer tools (e.g. Geneious) and visualized as tracks. Note, these do not include final prophage calls. <strong>04.phage.genomes</strong> <em>Pg</em> phage genomes in fasta format. <strong>05.phage.prots</strong> <em>Pg</em> phage proteins in fasta format, clipped proteins at the beginnings and ends of genomes are excluded. <strong>06.phage.gbs</strong> <em>Pg</em> phage information in GenBank format, clipped proteins at the beginnings and ends of genomes are excluded.