Underlying geology and climate interactively shape climate change refugia in mountain streams

Identifying climate-change refugia is a key adaptation strategy for reducing global warming impacts. Knowledge of the effects of underlying geology on thermal regime along climate gradients and the ecological responses to the geology-controlled thermal regime is essential to plan appropriate climate adaptation strategies. In the present study, the dominance of volcanic rocks in the watershed is used as a landscape-scale surrogate for cold groundwater inputs to clarify the importance of underlying geology in stream ecosystems along climate gradients. First, using hundreds of monitoring stations distributed across multiple catchments, we explored the relationship between watershed geology and the mean summer water temperature of mountain streams along climate gradients in the Japanese archipelago. Mean summer water temperature was explained by the interaction between the watershed geology and climate in addition to independent effects. The cooling effect supported by volcanic rocks reached up to 3.3°C among study regions, which was more pronounced in streams with less summer precipitation or lower air temperatures. Next, we examined the function of volcanic streams as cold refugia under contemporary and future climatic conditions. Community composition analyses revealed that volcanic streams hosted distinct stream communities composed of more cold-water species compared with non-volcanic streams. Scenario analyses based on multiple GCMs and RCPs revealed a geology-related pattern of thermal habitat loss for cold-water species. Non-volcanic streams rapidly declined in thermally suitable habitats for lotic sculpins even under the lowest emission scenario (RCP 2.6). In contrast, most volcanic streams will be sustained below the thermal threshold, especially for low and mid-level emission scenarios (RCP 2.6, 4.5). However, the distinct stream community in volcanic streams and geology-dependent habitat loss for lotic sculpins was not uniform and was more pronounced in streams with less summer precipitation or lower air temperatures. These findings highlight that underlying geology, climate variability, and their interaction should be considered simultaneously for effective management of climate-change refugia in mountain streams. 

Methods
Definitions of the variable headings

Variable
Explanation

Site
Monitoring site

Region
Monitoring region

Basin
Monitoring basin

Year
Monitoring year of water temperature

WT_℃
Mean summer water temperature (℃)

Volcanic_%
Volcanic rocks in the watershed (%)

Agri_%
Agricultural lands in the watershed (%)

CA_km2
Drainage area (km2)

Slope_%
Stream slope (%)

Elev_m
Site elevation (m)

AT_℃
Mean summer air temperature (℃)

Pricipi_mm
Total summer precipitation (mm)

Depth_cm
Mean water depth (cm)

Velocity_cm/s
Mean current velocity (cm/s)

Substrate
Substrate coarseness

DO_mg/l
Dissolved oxygen (mg/l)

NO3-_mg/l

NO3− (mg/l)

*Other columns' names indicate species names (e.g., Potamanthus.formosus).