Additional file 10 of MetaPro: a scalable and reproducible data processing and analysis pipeline for metatranscriptomic investigation of microbial communities

Additional file 10: Table S6.Comparisons of Enzyme annotations between MetaPro and SAMSA2 for NOD mouse, kimchi, and human oral biofilm datasets. This table compares the ECs of MetaPro against SAMSA2 on the NOD mouse, kimchi, and human oral biofilm datasets.  The SAMSA2 ECs were filtered for EC co-occurrence pairs that were not found in Swiss-Prot, and multiple unique ECs that annotated to the same gene family.  The resulting SAMSA2 ECs were contrasted against MetaPro’s EC, yielding a common set of ECs found in both tools, ECs found only by MetaPro, and ECs found only by SAMSA2. The same comparison is shown for MetaPro’s high-qaulity EC predictions.