oral-nasopharyngeal metagenome

177 nasopharyngeal microbiome samples from patients SARS-CoV-2 positive collected from February 2020 to January 2021 in the Emergency Service of Hospital General Universitario de Alicante (HGUA). Cobas SARS-CoV-2 PCR Test for the cobas 6800 System (Roche Molecular Systems, Branchburg, NJ, USA) was used to detect the presence of SARS-CoV-2.