Table S1 - Generalized Fragment Picking in Rosetta: Design, Protocols and Applications

Comparison between nnmake program and the new fragment picker. The ab-initio benchmark set comprises 62 small globular proteins. For each target, coordinate root-mean square deviation (crmsd) of the top 0.1% model is reported based on extensive Rosetta computations. Columns 7, 8: the reference (nnmake) fragments, columns 9, 10: fragments selected by the new algorithm; avg and sdev are mean and standard deviation from 50-fold 0.1 percentile bootstrap estimation (see also Figure 6).
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