Additional file 2 of Evidence for widespread existence of functional novel and non-canonical human transcripts

Additional file 2: Tables S1-S24. Table S1. Comparison with CRISPR/Cas9 screen on known genes. Table S2. Average TPM. Table S3. Comparison with CRISPR/Cas9 screen on lncRNAs. Table S4. Number of IACFs or non-phenotypic insertions in different genomic elements. Table S5. Clusters generated from simulated positions. Table S6. CACFs obtained from simulated positions. Table S7. Number of CACFs in different genomic elements. Table S8. Odds ratio of IACFs or non-phenotypic insertions in different genomic elements. Table S9. Odds ratio of insertions inside or outside of the CACFs in different genomic elements. Table S10. Conservation scores of the phenotypic vs non-phenotypic insertions based on IACFs or insertions located inside or outside of the CACFs. Table S11. InSETe information. Table S12. InSETT sequencing results summary. Table S13. InSETG sequencing results summary. Table S14. Expression of novel genes (InSETGs) or novel transcripts (InSETTs or InSETes) in normal human tissues and primary cells based on the FANTOM 5 CAGE data. Table S15. Distribution of real and simulated TSS clusters in the genome. Table S16. Number of TSS clusters in the real and simulated data with or without overlapping CAGE tags in at least one human tissue or primary cell sample. Table S17. CAGE signal in real and simulated InSET TSS clusters. Table S18. RT-qPCR analysis of InSETTs and InSETGs. Table S19. RT-qPCR analysis of all InSETTs and InSETGs. Table S20. The log2 cytosol/nucleus ratio of the novel and annotated transcripts of MAML2 and ESYT2. Table S21. RT-PCR primers. Table S22. RACE primers. Table S23. RT-qPCR primers of InSETTs. Table S24. RT-qPCR primers of InSETGs.