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MOESM5 of A curated benchmark of enhancer-gene interactions for evaluating enhancer-target gene prediction methods

NIAID Data Ecosystem2026-03-11 收录

增强子预测

监督方法性能基准

数据链接：

https://figshare.com/articles/dataset/MOESM5_of_A_curated_benchmark_of_enhancer-gene_interactions_for_evaluating_enhancer-target_gene_prediction_methods/11692446 数据链接链接失效反馈

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Additional file 5: Table S4. AUPRs for supervised methods.

应用场景：

创建时间：

2020-01-22

染色质修饰分析

增强子预测

Chromatin modifications are associated with many aspects of gene expression, yet their role in cell type specific changes during embryonic development remains elusive. Here we present a new in vivo me

NIAID Data Ecosystem70

PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos (PRO-Seq)

增强子预测

深度学习表观遗传学

PRO-seq, ATAC-seq, and Pol II ChIP-seq signals are used to predict active developmental enhancers. Machine learning models are trained and tested wit the different epigenetic marks for the prediction

NIAID Data Ecosystem40

PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos (PRO-Seq). PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos (PRO-Seq)

增强子预测

表观遗传学分析

PRO-seq, ATAC-seq, and Pol II ChIP-seq signals are used to predict active developmental enhancers. Overall design: Machine learning models are trained and tested wit the different epigenetic marks for

NIAID Data Ecosystem30

DeepSTARR predicts enhancer activity from DNA sequence and enables the de novo design of synthetic enhancers [Drosophila oligo UMI-STARR-seq]

增强子预测

合成增强子设计

Enhancer sequences control gene expression and comprise binding sites (motifs) for different transcription factors (TFs). Despite extensive genetic and computational studies, the relationship between

NIAID Data Ecosystem70

Additional file 5: of A purely bioinformatic pipeline for the prediction of mammalian odorant receptor gene enhancers

嗅觉受体基因

增强子预测

Annotation tracks containing evolutionarily conserved stretches among loci of selected genomic architectures. BED-formatted text files (.bed) annotating, at threshold distance = 1 Mb, broadened conser

NIAID Data Ecosystem40

MOESM5 of A curated benchmark of enhancer-gene interactions for evaluating enhancer-target gene prediction methods

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