Candidates for tumor PAI: recurrent SCNA loci from TCGA that overlap cancer-associated SNPs (NHGRI GWAS Catalog) identified in matching tumor types.

SNP associations and tumor types highlighted in bold indicate those whereby cancer type of SNP associations matches tumor type in which recurrent SCNAs were identified.* Chromosomal locations based on human genome build hg19.** Cancer type of SNP association loci that overlap SCNA regions (SNPs retrieved from January 2015 version of NHGRI GWAS catalog).‡ Tumor type in which recurrent SCNAs were detected in TCGA.ALL = acute lymphoblastic leukemia; BLCA = bladder; BRCA = breast; CLL = chronic lymphoblastic leukemia; CRC = colorectal; GBM = glioblastoma multiforme; HNSC = head and neck squamous cell carcinoma; KIRC = kidney renal cell carcinoma; LAML = acute myeloid leukemia; LUAD = lung adenocarcinoma; LUSC = lung squamous cell carcinoma; OV = serous ovarian carcinoma; UCEC = endometrial (uterine).Candidates for tumor PAI: recurrent SCNA loci from TCGA that overlap cancer-associated SNPs (NHGRI GWAS Catalog) identified in matching tumor types.