Additional file 1 of Potential of low-density genotype imputation for cost-efficient genomic selection for resistance to Flavobacterium columnare in rainbow trout (Oncorhynchus mykiss)

Additional file 1: Table S1. Number of SNPs in the low-density panels. RandLD = random sampling of SNPs in the low-density panels. EquiLD = equidistant sampling of SNPs in the low-density panels. Table S2. Values of accuracy and bias of genomic prediction obtained for the random, equidistant and top LD-Panels before and after imputation. RandLD = random sampling of SNPs in the low-density panels. EquiLD = equidistant sampling of SNPs in the low-density panels. TOP-LD = top SNP low-density panels. Mean of accuracy ± sd across all 100 values. Table S3. Proportion of increase or decrease of the accuracy of genomic prediction obtained for the random, equidistant and top LD-panels before and after imputation compared to pedigree and HD-panels. RandLD = random sampling of SNPs in the low-density panels. EquiLD = equidistant sampling of SNPs in the low-density panels. TOP-LD = top SNP low-density panels. Mean of accuracy ± sd across all 100 values. PBLUP = pedigree-based BLUP. HD-GBLUP = genomic based BLUP obtained with the high-density (HD) panel