Human adenovirus type 108 nucleotide sequences
收藏科学数据银行2025-04-24 更新2026-04-23 收录
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资源简介：
21 whole genome sequences of HAdV-108 were obtained from children hospitalized with acute respiratory infections in 10 hospitals across Northern and Southern China (Beijing, Changchun, Wenzhou, Yinchuan, Hebei, Guangzhou, Shanghai, Zhejiang, Guiyang, Shenyang) between 2014 and 2024. Sequencing method: Illumina second-generation sequencing platform. Use fastp (default parameter 0.22.0, -- low_complexity_filter) to perform quality filtering on the raw data; Align with the reference genomes using bwa (default parameter 0.7.17); BWA (default parameter 0.7.17) is uesd to compare and generate SAM files, while Samtools (default parameter 1.3.1) converts SAM to the corresponding binary BAM format; Use pysamstats (default parameter 1.1.2) to perform statistics based on the BAM file situation; Use bcftools (1.9 consensus command) to obtain the consensus sequences. The whole genome sequences were annotated utilizing Prokka v1.11.
提供机构：
Jinjin Wang
创建时间：
2025-04-24
