Comparison of Temecula-1 and M23 X. fastidiosa genomes.

1see Table 3.“Variable” regions of the aligned genomes were regions with >1% sequence divergence (see Methods). All other regions were classified as “Constant”. Variable regions were further classified into four subgroups: Recombination-M23 and Recombination-Tem (evidence of recombination of X. fastidiosa subsp. multiplex into M23 and Temecula-1 respectively); Duplicate Associated (at least one other copy of the region present in the genomes); and Other (unique variable sequence of unknown origin). Large Indels (>400 bp) were also recorded.