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Phylogenetic analysis of intron retention in vertebrates

NIAID Data Ecosystem2026-03-09 收录

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脊椎动物系统发育学

数据链接：

https://www.ncbi.nlm.nih.gov/bioproject/PRJNA350712 数据链接链接失效反馈

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资源简介：

Our study is detailing new evidence for transcriptomic complexity realized by a mechanism of orchestrated intron retention.

应用场景：

创建时间：

2016-10-26

脊椎动物系统发育学

分子系统学

Extant species in the order Crocodylia are remnants of an ancient lineage of large-bodied archosaur reptiles. Despite decades of systematic studies, phylogenetic relationships among members of the gen

NIAID Data Ecosystem130

Intron retention induced by microsatellite expansions as a disease biomarker.

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疾病生物标志物

Microsatellite expansions often occur in non-coding regions of the genome. In this study, we test their effect on host transcript RNA processing. RNA-seq on affected tissues and peripheral blood from

NIAID Data Ecosystem70

Vertebrates species trees

脊椎动物系统发育学

基因组完整性评估

Vertebrate complete phylogenetic tree (Vertebrate_consensus_tree_nodelabel.nwk) and the same tree but pruned retaining only species with at-least 80% complete BUSCO genes (BUSCO80_vertebrate_tree.nwk)

Figshare2023-05-03 更新40

Intron Retention data (using iDiffIR)

基因表达

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Intron retention data for Collins et al. 2019 This contains data for 3 mutant lines from the mouse DMDD project (Dhx35, Morc2a and Hmgxb3). Repeat annotation identified by RepeatMasker was downl

DataCite Commons2025-04-01 更新70

MOESM7 of Enteric infection induces Lark-mediated intron retention at the 5′ end of Drosophila genes

基因表达

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Additional file 7. Intron retention results. Sheet1. Intron retention annotations and results for the DGRP lines. Sheet2. DGRP PSI table per sample. Sheet3. DGRP delta PSI table per strain. Sheet4. DG

DataCite Commons2020-08-26 更新50

Phylogenetic analysis of intron retention in vertebrates

资源简介：

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