Additional file 2 of RNAlign2D: a rapid method for combined RNA structure and sequence-based alignment using a pseudo-amino acid substitution matrix

Additional file 2. Table S1. Mean sum-of-pair scores (SPS) and positive predictive values (PPVs) with standard deviations obtained in BraliBase2.1 and RNAStralign benchmarks. In the highlighted fields, values differed between the full BraliBase2.1 benchmark (top values) and a smaller version of benchmark, where datasets containing ≥ 2 (k2, k3), ≥ 3 (k5), and ≥ 5 (k10) common sequences with k7 dataset were excluded (bottom values in parentheses).