EarthCube2020: Reproducible and Replicable Scientific Use Cases with CyberGIS-Jupyter for water and Sciunit tool using SUMMA and pySUMMA
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These notebooks are created to evaluate the reproducibility and replicability using Sciunit in different computational environment. You can open these notebooks using CyberGIS-Jupyter for water from `Open with button`. Notebook1 and notebook2 were created in local computer to test computational environment and create Sciunit containers to encapsulate SUMMA simulation workflow. - Notebook1: N_1_Reproducibility_Evaluation_of_the_SUMMA_Model_in_the_Model_Agnostic_Framework.ipynb - Notebook2: N_2_Creating_and_Executing_the_Sciunit_Container_to_Encapsulating_and_Evaluating_the_immutable_computational_environment.ipynb So you can start with notebook3. - Notebook3: N_3_Reproducibility_and_Replicability_Evaluation_using_the_Sciunit_Container_in_CyberGIS_for_water.ipynb From this process, you can evaluate the reproducibility and replicability of SUMMA simulation with repeating of Sciunit container and changing the SUMMA configuration. - Reproduced SUMMA application: Three different stomatal Resistance Parameterizations (BallBerry, Jarvis, and Simple Stomatal Method) - Replicated SUMMA application: Changing the function for the soil moisture control on stomatal resistance from NoahType to CLM_Type
本系列Jupyter Notebook旨在借助Sciunit（Sciunit）工具，在不同计算环境中开展可复现性与可重复性评估。 用户可通过`打开方式`按钮，借助CyberGIS-Jupyter for water（CyberGIS-Jupyter for water）环境打开本系列Notebook。 Notebook 1与Notebook 2均在本地计算机中创建，用于测试计算环境并创建Sciunit容器以封装SUMMA（SUMMA）模拟工作流： - Notebook 1：N_1_Reproducibility_Evaluation_of_the_SUMMA_Model_in_the_Model_Agnostic_Framework.ipynb - Notebook 2：N_2_Creating_and_Executing_the_Sciunit_Container_to_Encapsulating_and_Evaluating_the_immutable_computational_environment.ipynb 因此可从Notebook 3开始开展相关实验： - Notebook 3：N_3_Reproducibility_and_Replicability_Evaluation_using_the_Sciunit_Container_in_CyberGIS-Jupyter_for_water.ipynb 通过该流程，用户可通过复用Sciunit容器并修改SUMMA配置参数，评估SUMMA模拟工作流的可复现性与可重复性： - 复现的SUMMA应用：三种不同的气孔阻力参数化方案（BallBerry、Jarvis及简单气孔法） - 可复制的SUMMA应用：将控制气孔阻力的土壤湿度调控函数从NoahType修改为CLM_Type
