Native structure is here taken as the Rfam consensus structure from the seed alignments of these elements of HCV and HIV. Two measures are given. The average distance represents the average base pair
Files used to create SVG illustrations shown in Supplementary figure S2 of the paper:1. LinearTurboFold alignments/structures2. GFF annotation files used to color structure (results of annotate_intron
A comparison of three secondary structure prediction algorithms, using shape data from Deigan et al. [15] for the three RNA molecules, yeast aspartyl tRNA (asp-tRNA), hepatitis C virus internal riboso
S3A. The list of 993 mutations in six rubella isolates (from [20]). Sequences are shown in DNA format (T instead of U) to maintain compatibility with other outputs of the mutation signature R-script.
An RNA switch triggers biological functions by toggling between two conformations. RNA switches include bacterial riboswitches, where ligand binding can stabilize a bound structure. For RNAs with only
