Additional file 7 of A global phylogenomic and metabolic reconstruction of the large intestine bacterial community of domesticated cattle

Additional file 7: Table S7. Count software analysis of the 15 taxonomic classes (A) and list of the most influential KOs (B) identified by the principal coordinate analysis presented in Fig. 2B. A: From left to right: the KO id, the number of gains and expansions for the given ortholog (overall) and their the sum, the gains and expansions in RefSeq genomes, the gains and expansions in fecal MAGs and the taxonomic class the analysis was conducted for. In the last two columns, the overall gene losses and contractions are presented as well but are grayed out on account of not examining them because we used MAGs. On the smaller subtable to the right, we present the KOs that were identified multiple times in the independent Count analyses (we performed 15 analyses one for each class that we built a phylogeny). B: From left to right: the KO id, the coordinates and the contribution of each feature based on which we selected the top twenty (as most influential) to present in Fig. 2. For the top hundred most influential vectors (a.k.a. features) we present the KO description as well. Bold font indicates features that were identified both in the Count analysis for the Bacteroidia, Clostridia or Spirochaetia classes and among the top 100 most influential features in the PCoA analysis.