five

Fig2: HiDeF_Tabula_Muris_FACS

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A hierarchy of mouse cell types generated for the Tabula Muris FACS dataset (paper: https://doi.org/10.1038/s41586-018-0590-4; source data: https://doi.org/10.6084/m9.figshare.5821263.v2), by applying the HiDeF analysis (default parameters; https://github.com/fanzheng10/HiDeF) to the shared nearest neighbor graph (sNN) of single-cells pre-calculated in the original study. The 'MemberList' field of each vertex (community) contains a list of cells, for which the indices match to the order in the following metadata file: https://www.dropbox.com/s/w2fma0r0lpthznb/FACS_metadata.tsv?dl=0
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2020-06-18
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