The details of the identified TEs in <i>C</i>. <i>reticulatum</i>, including the chromosome/scaffold id, TE start and end position in the genome, TE corresponding superfamily, and TE length.
Additional file 1: Table S1. Re-annotated results by using TEsorter. (Figure 1 box V TE entries). Table S2. Re-annotated results by using DeepTE. (Figure 1 box VI TE entries). Table S3. Figure 1 box I
Supplementary Material 13: Table S4 TE annotations at the Super-family level for the Pucciniomycotina genomes. OrderAnn represents the different TE SF; nbTE represents the number of TE families in eac
We annotated TE copies only in the euchromatic regions of the genome since heterochromatic regions are gene-poor (Smith et al. 2007) and its assembly and annotation usually require specific methods an
