PCMDB

PCMDB contains three different types of cell markers for six model plants (Arabidopsis, rice, maize, soybean, tomato and tobacco), including experimentally validated marker genes, differentially expressed marker genes based on Bulk RNA-seq data, and differentially expressed genes across specific cells identified by scRNA-seq. 3119 experimentally validated marker genes were collected by manuallycurating over 1676 literatures.

PCMDB 收录了拟南芥、水稻、玉米、大豆、番茄和烟草这6种模式植物的三类细胞标记物，涵盖实验验证型标记基因、基于批量RNA测序（Bulk RNA-seq）数据的差异表达标记基因，以及经单细胞RNA测序（scRNA-seq）鉴定得到的特异性细胞差异表达基因。本数据集通过人工审阅1676余篇相关文献，共收集得到3119个实验验证型标记基因。

搜集汇总

背景与挑战

背景概述

PCMDB是一个全面的植物细胞标记数据库，涵盖六种模型植物的实验验证、Bulk RNA-seq和scRNA-seq数据中的细胞标记信息，提供详细的细胞和组织类型分类，并支持多种分析工具和下载功能。