Open Reading Frames (ORFs) and annotations from the paired-end transcriptome outputs of deep-sea zoanthid Zibrowius primnoidus RNASeq data

This dataset contains Open Reading Frames (ORFs) and associated annotations obtained from the paired-end transcriptome outputs of the deep-sea zoanthid Zibrowius primnoidus RNASeq data. The dataset includes the following files:

From TransDecoder analyses:

• Zibrowius_primnoidus_assembly.Trinity.fasta.transdecoder.cds: Nucleotide sequences for coding regions of the final candidate ORFs, obtained with TransDecoder from the paired-end transcriptome assembly of Zibrowius primnoidus.

• Zibrowius_primnoidus_assembly.Trinity.fasta.transdecoder.gff3: Genomic-style coordinates of the final selected ORFs on the Trinity transcripts from the paired-end transcriptome of Zibrowius primnoidus.

• Zibrowius_primnoidus_assembly.Trinity.fasta.transdecoder.pep: Peptide sequences for the final candidate ORFs, predicted by TransDecoder from the paired-end transcriptome of Zibrowius primnoidus.

• Zibrowius_primnoidus_assembly.Trinity.fasta.transdecoder.bed: BED-formatted file describing ORF positions on the Trinity transcripts, suitable for visualisation in genome browsers such as IGV or GenomeView.

From similarity and domain-based annotation:

• Uniref90_metazoa.diamond.blastp.outfmt6.w_pct_hit_length: DIAMOND BLASTp results of predicted proteins against the UniRef90 metazoa database, including the top hit length and the percentage of the hit covered by the alignment for each ORF.

• pfam.domtblout: Pfam domain annotations for the predicted proteins in the de novo transcriptome assembly of Zibrowius primnoidus.

From Trinotate analyses:

• Zibrowius_primnoidus_assembly.Trinity.annotation_report.tsv: Comprehensive annotation table generated by Trinotate, including BLAST, Pfam, signal peptide and transmembrane predictions, and other functional annotations for the paired-end de novo assembly of Zibrowius primnoidus.

• Zibrowius_primnoidus_assembly.Trinity.annotation_report.html.cXp_summary.html: HTML summary report from Trinotate, providing an overview of the functional annotation and transcript features of the Zibrowius primnoidus assembly.