CellMiner Cross-Database (CellMinerCDB) Cancer Pharmacogenomics

These are cancer cell line pharmacogenomics datasets that work with rcellminer and CellMinerCDB (see publications for details). An example for extracting data from the rcellminer and CellMinerCDB compatible packages: library(nciSarcomaData) # DRUG DATA ---- drugAct <- exprs(getAct(nciSarcomaData::drugData)) drugAnnot <- getFeatureAnnot(nciSarcomaData::drugData)[["drug"]] # MOLECULAR DATA ---- ## List available datasets names(getAllFeatureData(nciSarcomaData::molData)) ## Extract data and annotations expData <- exprs(nciSarcomaData::molData[["exp"]]) mirData <- exprs(nciSarcomaData::molData[["mir"]]) expAnnot <- getFeatureAnnot(nciSarcomaData::molData)[["exp"]] mirAnnot <- getFeatureAnnot(nciSarcomaData::molData)[["mir"]] # SAMPLE DATA ---- sampleAnnot <- getSampleData(nciSarcomaData::molData)