Pedigree-based genome-wide imputation using a low-density amplicon panel for the highly polymorphic Pacific oyster <i>Crassostrea</i> (<i>Magallana</i>) <i>gigas </i>

Files to support the analysis of the Pacific oyster panel imputation project. <i>all_inds_wgrs_and_panel_biallele_only_fi3_imputed.vcf.gz</i> = post-FImpute3 imputation VCF file<i>fi3_loci_by_inds_all_imputed_chr</i><i>.txt</i> = post-FImpute3 imputation text file (in AlphaImpute2 format) <i>mpileup_calls_noindel5_miss0.15_SNP_q99_avgDP10_biallele_minDP10_maxDP10000_minGQ20_miss0.15_MAF0.05_offspring_only_rename</i><i>.bcf</i> = offspring empirical genotypes by panel BCF file<i>G0923-21-VIUN_SampleInventory_V2_recd_2024-08-16</i><i>.txt</i> = offspring phenotype file<br>

本数据集用于支撑太平洋牡蛎基因分型面板基因型填充项目的分析工作。`all_inds_wgrs_and_panel_biallele_only_fi3_imputed.vcf.gz`：为经FImpute3完成基因型填充后的变异识别格式（Variant Call Format，VCF）压缩文件；`fi3_loci_by_inds_all_imputed_chr.txt`：为经FImpute3完成基因型填充后的文本文件，格式遵循AlphaImpute2规范；`mpileup_calls_noindel5_miss0.15_SNP_q99_avgDP10_biallele_minDP10_maxDP10000_minGQ20_miss0.15_MAF0.05_offspring_only_rename.bcf`：为基于该基因分型面板得到的子代实验基因型二进制变异识别格式（Binary Call Format，BCF）文件；`G0923-21-VIUN_SampleInventory_V2_recd_2024-08-16.txt`：为子代表型文件