Models and datasets - The effects of model complexity and size on metabolic flux distribution and control. Case study in Escherichia coli.

Models and raw datasets required for reproducing the results of the manuscript The effects of model complexity and size on metabolic flux distribution and control. Case study in Escherichia coli. by Hameri et al. 

Models:

Three thermodynamically curated models of E.coli metabolism of increasing size - namely D1, D2 and D3 - are provided in MATLAB format .mat files:

D1: D1_FDP1.mat

D2: D2_FDP1.mat

D3: D3_FDP1.mat

Datasets:

Configuration MATLAB .mat files that were used to generate the control coefficient (Metabolic Control Analysis) for D1, D2 and D3. Also, the steady-state metabolic flux and concentration vectors are provided.

D1: metSampDataD1_FDP1.mat

D2: metSampDataD2_FDP1.mat

D3: metSampDataD3_FDP1.mat

The populations of 50’000 control coefficients for D1, D2 and D3 are provided for each model in five separate subsets/batches of 10’000 control coefficients. Each model X has 50 files YY of 1’000 control coefficients DataDX_FDP1YY, where X is the model ranging from 1-3 and YY is the file number ranging 1-50.

D1:

Supplementary dataset 1: https://doi.org/10.5281/zenodo.4585663

Supplementary dataset 2: https://doi.org/10.5281/zenodo.4585702

Supplementary dataset 3: https://doi.org/10.5281/zenodo.4585719

Supplementary dataset 4: https://doi.org/10.5281/zenodo.4585739

Supplementary dataset 5: https://doi.org/10.5281/zenodo.4585865

D2:

Supplementary dataset 6: https://doi.org/10.5281/zenodo.4585932

Supplementary dataset 7: https://doi.org/10.5281/zenodo.4585995

Supplementary dataset 8: https://doi.org/10.5281/zenodo.4586074

Supplementary dataset 9: https://doi.org/10.5281/zenodo.4586286

Supplementary dataset 10: https://doi.org/10.5281/zenodo.4586380

D3:

Supplementary dataset 11: https://doi.org/10.5281/zenodo.4586482

Supplementary dataset 12: https://doi.org/10.5281/zenodo.4586597

Supplementary dataset 13: https://doi.org/10.5281/zenodo.4586660

Supplementary dataset 14: https://doi.org/10.5281/zenodo.4586732

Supplementary dataset 15: https://doi.org/10.5281/zenodo.4586767