Supplemental Material for Snoeck et al., 2018

File S1 contains the CDS sequences of the T. urticae genome annotation of August
11, 2016. File S2 contains the protein sequences of the short-chain
dehydrogenases of T. urticae, M. occidentalis, D. melanogaster and H. sapiens
that were included in the phylogenetic analysis. File S3 contains the sequences
of the full-length single PLAT domain proteins of T. urticae, T. evansi, P. ulmi and P. citri that were included in the phylogenetic analysis. Figure S1
shows the expression heatmaps of genes coding for group I and II SDRs and of group
I and II single PLAT domain protein genes across the replicated T. urticae host plant populations (lima
bean, soybean, cotton, tomato and maize). Table S1 contains the differential
gene expression results of the T. urticae
host plant populations. Table S2 shows the overlap between DEGs of the
different T. urticae host plant populations.
Table S3 shows the k-means clustering
of the DEGs identified in the different host plant populations of T. urticae. Table S4 shows the OrthoMCL grouping
of the T. urticae proteome. Table S5
contains the OrthoMCL enrichment results of the DEG sets of each T. urticae host plant population. Table
S6 contains the significantly enriched GO terms in the DEG sets of the
different host plant populations of T.
urticae. Table S7 contains the short-chain dehydrogenase genes annotated in
the T. urticae genome. Table S8
contains the single PLAT domain protein genes annotated in the T. urticae genome. T. urticae gene expression data
are available at the Gene Expression
Omnibus with accession numbers GSE50162, GSE80337 and
GSE68708.