Additional file 8 of The Local Edge Machine: inference of dynamic models of gene regulation

Table: Compilation of literature that supports regulatory interactions in yeast cell-cycle networks 1â 5. Numbers in the first column match literature citations from Additional files 2 and 3. Each number corresponds to a different study that provides experimental evidence for a regulatory interaction. ChIP studies provide binding evidence for a TF to a target gene promoter. Genetic studies provide directional evidence for how a TF influences the expression of a target gene. Phosphorylation and other proteinâ protein interaction studies provide evidence for how kinases regulate TF activity, localization, and/or binding affinity. (XLSX 40 kb)