The OREGANO knowledge graph for computational drug repurposing

The files here are data files from the OREGANO project, which consists of building a holistic knowledge graph on drugs, including natural compounds. Here is the list of files:<br>- OREGANO_V2.tsv : The triplet file used for link prediction. 3 columns : Subjet ; Predicate ; Object- oregano_info_complet.ttl : The OREGANO knowledge graph in turtle format with the names and cross-references of the various integrated entities.<br>The following files contain the cross-references of OREGANO entities according to their type. They are all organised as follows: the external sources are the titles of the columns and each line begins with the identifier of the entity in OREGANO :- TARGET.tsv: Cross-reference table of the 21,987 targets.<br>- PHENOTYPES.tsv: Cross-reference table of the 6,930 phenotypes.<br>- DISEASES.tsv: Cross-reference table of the 8,862 diseases.<br>- PATHWAYS.tsv: Cross-reference table of the 2,062 pathways.<br>- GENES.tsv: Cross-reference table of the 19,938 genes.<br>- COMPOUND.tsv: Cross-reference table of the 28,069 compounds.<br>- INDICATIONS.tsv: Cross-reference table of the 2,080 indications.<br>- SIDE_EFFECT.tsv: Cross-reference table of the 5,364 side-effects.<br>- ACTIVITY.tsv: Names of the 76 activities.<br>- EFFECT.tsv: Names of the 162 effects.A SPARQL endpoint has been provided to enable users to retrieve and explore the knowledge graph at OREGANO SPARQL endpoint .<br>The integration files and the knowledge graph are available on the GitHub of the OREGANO project in the Integration folder: Gitub repository .