Additional file 3: of Bimodal dynamics of primary metabolism-related responses in tolerant potato-Potato virus Y interaction

Primary metabolism-related gene expression changes following PVY NTN infection in cv. Désirée (NT) and NahG-Désirée (NahG). Differentially expressed genes in virus versus mock treated plants of cv. Désirée and NahG-Désirée at 1, 3, 4, 5 and 7 dpi are shown. Genes are represented for four selected functional groups (MapMan ontology BINs: photosynthesis [1], major carbohydrate metabolism [2], minor CHO metabolism [3] and glycolysis [4]. Only expression values of statistically significantly (FDR p < 0.05) differentially expressed genes in at least one time point are shown. Expression values were log2 transformed, and a fold-change difference (log2FC) was calculated for PVYNTN versus mock. Values are color-coded as red for up-regulation and green for down-regulation. Transcripts were identified using POCI (Potato Oligo Chip Initiative) [64] and stNIB [78] identifiers. (XLSX 149 kb)