Assembly, Annotation, And Read Counts For A Simulated Upwelling Experiment

Data sets for: <strong>Lampe RH</strong>, Cohen NR, Ellis KA, Bruland KW, Maldonado MT, Peterson TD, Till CP, Brzezinski MA, Bargu S, Thamatrakoln K, Kuzminov FI, Twining BS, and Marchetti A. (2018) Divergent gene expression among phytoplankton taxa in response to upwelling. <em>Environmental Microbiology</em> 20, 3069-3082. File descriptions: contigs.fa - final assembly counts_KO.tab - Raw counts for each contig with taxonomic annotation and KEGG Ortholog (KO) annotation. counts_MO.tab - Raw counts for each contig with taxonomic annotation and KEGG Modules (MO) annotation. counts_kegghit.tab - Raw counts for each contig with taxonomic annotation and a KEGG gene. Counts column names correspond to the following treatments: <pre>------------------------ Treatment | Sample IDs ------------------------ T0 | Q45 T72-C | Q46 T72-Fe | Q50 T72-DFB | Q53 T120-C | Q55, Q56, Q57 T120-Fe | Q58, Q59, Q60 T120-DFB | Q61, Q62, Q63 T120-FeDFB | Q64, Q65, Q66 </pre> All counts files are tab delimited.