PRROMenade functional index (KEGG EC-labeled), snapshot 2020-06-06 — mirror of IBM IFGP dataset used by Haiminen et al. 2021

This is the PRROMenade pre-computed index for the IBM Functional Genomics Platform (IFGP), previously known as OMXWare and previously available on https://developer.ibm.com/exchanges/data/, as described in https://github.com/ComputationalGenomics/PRROMenade. This index was described and used in: Niina Haiminen, Filippo Utro, Ed Seabolt and Laxmi Parida: Functional profiling of COVID-19 respiratory tract microbiomes. Scientific Reports, 2021. https://www.nature.com/articles/s41598-021-85750-0It counts (21.2 million bacterial; 53,000 viral domains), and it’s labelled with the KEGG EC hierarchy. However, as the link https://developer.ibm.com/exchanges/data/ does not provide such an index anymore, this is a new accessible link, so the functional profiling pipeline available in the HERMES-WIRE suite (https://github.com/Baud-lab/hermes-wire) can be performed.