SNPs confirmed using targeted genomic amplicon sequencing. Red clover genotypes used in the study is listed in the first column. Beginning at second column, SNPs labels were listed at the top of each
Genomic sequences of initial set of 200 fragments containing SNPs identified by comparing the Cherokee genomic sequences to draft genome of red clover. The genomic sequences were from the Cherokee var
The details of the detected SNPs using SAMtools and subsequent annotation using ANNOVAR are displayed herein, including upstream, exonic, intronic, splicing, downstream, and intergenic SNPs, point mut
Sequence alignment of RNA-seq identified SNPs. The alignment for each locus included sequences from the following three sources: reference sequence (with RefSeq in the label), sequence generated using
