MS datasets for proteomic context-aware modeling of protein palmitoylation

This repository contains MS-derived datasets used in the study on proteomic context-aware modeling of protein palmitoylation. The repository includes two datasets: HeLa, consisting of processed protein abundance data derived from a previously published study by our laboratory (DOI: 10.1038/s41388-025-03604-9), and PANC-1, consisting of processed protein abundance data generated by our laboratory using a unified data processing pipeline. The deposited files contain protein abundance matrices and corresponding palmitoylation site table derived from mass spectrometry–based proteomics experiments. Raw mass spectrometry data have been submitted to the PRIDE repository and will be made publicly available upon completion of repository curation. The source code and trained model are available separately via the project's GitHub repository (https://github.com/kkkyj/GAN-Palm).