five

Multi-behavioral fingerprints can identify the mode of action for neuroactive environmental chemicals _ VAMR2

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doi.org2025-03-22 收录
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http://doi.org/10.17632/97f3yffwz9.1
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Data and Code Description This dataset contains zebrafish behavior metrics and R scripts for analysis and visualization. The data includes 26 metrics, such as baseline activity (BSL1-4), visual (VSR, VMR) and acoustic startle responses (ASR), habituation (ASH), interstimulus intervals (ISI, IEI), inter-bout intervals (IBI), and memory retention (ASR2/3), measured in pixels per second. Nonparametric bootstrapping was used for statistical analyses, along with Kruskal-Wallis tests and Benjamini-Hochberg corrections for multiple comparisons. Effect sizes were calculated using Strictly Standardized Median Differences (SSMD). R scripts are provided to generate cloud plots, SSMD heatmaps, and multidimensional scaling (MDS) plots. KNIME was used for data processing, while all visualizations were created in R Studio. (Quantified using custom KNIME workflows (version 4.6.3) in combination with R scripts (R Core Team 2023) for statistical analysis and visualization. Statistical Analysis and Visualization Tools: Employed R add-on packages ggplot2 and RColorBrewer).

数据与代码描述:本数据集收录了斑马鱼行为指标及其分析与可视化所用的 R 脚本。数据涵盖了 26 项指标,包括基础活动(BSL1-4)、视觉(VSR,VMR)和声学惊跳反应(ASR)、习惯化(ASH)、刺激间间隔(ISI,IEI)、回合间间隔(IBI)以及记忆保持(ASR2/3),以像素每秒为测量单位。统计分析采用了非参数自举法,辅以克鲁斯卡尔-沃利斯检验和贝杰明尼-霍赫伯格校正以处理多重比较,效应量通过严格标准化中位数差异(SSMD)进行计算。提供 R 脚本以生成云图、SSMD 热图和多维尺度(MDS)图。数据处理采用 KNIME 进行,所有可视化均由 R Studio 创建。(采用定制 KNIME 工作流(版本 4.6.3)结合 R 脚本(R Core Team 2023)进行统计分析与可视化。统计分析与可视化工具:使用了 ggplot2 和 RColorBrewer R 扩展包。)
提供机构:
Mendeley Data
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