TIPP3 Reference Package for Abundance Profiling
收藏DataCite Commons2025-04-21 更新2025-05-17 收录
下载链接：
https://databank.illinois.edu/datasets/IDB-2621955
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资源简介：
#Overview
These are reference packages for the TIPP3 software for abundance profiling and/or species detection from metagenomic reads (e.g., Illumina, PacBio, Nanopore, etc.). Different refpkg versions are listed.
TIPP3 software: https://github.com/c5shen/TIPP3
#Changelog
V1.2 (`tipp3-refpkg-1-2.zip`)
>>Fixed old typos in the file mapping text.
>>Added new files `taxonomy/species_to_marker.tsv` for new function `run_tipp3.py detection [...parameters]`. Please use the latest release of the TIPP3 software for this new function.
V1 (`tipp3-refpkg.zip`)
>>Initial release of the TIPP3 reference package.
#Usage
1. unzip the file to a local directory (will get a folder named "tipp3-refpkg").
2. use with TIPP3 software: `run_tipp3.py -r [path/to/tipp3-refpkg] [other parameters]`
提供机构：
University of Illinois Urbana-Champaign
创建时间：
2025-04-21
