Breast cancer genes associated with pathways by study.

Within each study (major columns), genes are grouped by function. Mbrn: membrane-associated (GPCR, FcR, HA, RTK, Ion channels), Ncls: nuclear (cell cycle control, transcription, splicing), MPK: MAP kinases, PI/EC: PI cycle/EEC,.Othr: other. Within each block, muGWAS genes (Fig 1) are sorted from top by s-value (s6). s-values above aGWS (CGEM: 5.29, EPIC: 5.71, PBCS: 5.13) are shown in bold. Genes above aGWS in ssGWAS only (CGEM: 4.03, EPIC: 4.00, PBCS: 3.84) are sorted from bottom up (s1); ssGWAS results for genes also implicated in muGWAS are shown next to the muGWAS results. See Table A of S1 File for Entrez Gene identifiers and Table B of S1 File for replication across populations, which is indicated in bold names.