Supplementary files from paper "Revisiting the evolution and function of NIP2 parologs in the Rhynchosporium spp. complex"

This dataset contains additional files related with the "Revisiting the evolution and function of NIP2 parologs in the Rhynchosporium spp. complex" paper. Folder 1: R script for differential gene expression analysis and RPKM calculation (EdgeR_WAI453.html) including the input files (gene_count_matrix.csv and for_RPKM_featureCounts.csv). Folder 2: Genome assembly (R.communeWAI453_20contigs.fasta) and annotation of R. commune WAI453 (R.communeWAI453.gff3). Folder 3: Sequence of NIP2 and NLP paralogs from R. commune global populations and R. commune sister species used in this study (nip2.1.all.fasta-nlp4.all.fasta) and the summary of presence-absence polymorphism of all NIP2 and NLP genes in R. commune and three R. commune sister species (gene_summary.csv). Folder 4: Pdb files of structural prediction of NIP2 proteins generated by AlphaFold 2 (nip2.1.pdb, nip2.3.pdb, and nip2.6.pdb). Folder 5: A python script to parse local blast result into fasta file (BLASTtoGFF_multiple.py).