Differential abundance analysis workflow (16S rRNA gene profiling data) - Example
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https://figshare.com/articles/dataset/Differential_abundance_analysis_workflow_16S_rRNA_gene_profiling_data_-_Example/3811251
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资源简介：
In order to test for the differential abundance of taxa that may drive the differences observed between inferred microbial communities derived from the different DNA isolation procedures, we performed DESeq2 analyses. Here we provide an example for such an analysis from human fecal specimen, examined using 16S rRNA gene profiling.
This workflow relates to the article:
Berith E. Knudsen, Lasse Bergmark, Patrick Munk,
Oksana Lukjancenko, Anders Priemé, Frank M. Aarestrup, Sünje J. Pamp (2016) Impact of Sample
Type and DNA Isolation Procedure on Genomic Inference of Microbiome
Composition. mSystems Oct 2016, 1 (5) e00095-16; DOI:
10.1128/mSystems.00095-16
http://msystems.asm.org/content/1/5/e00095-16
创建时间：
2016-09-08
