Summary of sequence data, and numbers of potential SNP and indels, relative to 3D7 reference sequence.
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PE = paired end; Cover. = coverage; all refers to all positions; >0 refers to those positions with non-zero coverage; Mito = mitochondrial genome; unique = % of sliding 50-mer windows around each position that are unique; indels = insertions and deletions; Q20/30/60 equates to error rates of 1 in 100/1000/1000000 base pairs respectively.
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2015-12-02



